IL_7OYD_243
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_243 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.1241
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OYD|1|9|U|1733
7OYD|1|9|G|1734
7OYD|1|9|A|1735
7OYD|1|9|G|1736
*
7OYD|1|9|C|1798
7OYD|1|9|G|1799
7OYD|1|9|A|1800
7OYD|1|9|A|1801
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain W
- eL24
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