IL_7OYD_248

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_248 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1169

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7OYD|1|9|C|1841
7OYD|1|9|4AC|1842
7OYD|1|9|G|1843
*
7OYD|1|9|C|1856
7OYD|1|9|G|1857
7OYD|1|9|G|1858

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain OO

RPS14

Chain n

60s ribosomal protein l41