IL_7OYD_255

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7OYD|1|K|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_255 not in the Motif Atlas

Geometric match to IL_5TBW_378

Geometric discrepancy: 0.0881

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OYD|1|K|G|82
7OYD|1|K|A|83
7OYD|1|K|U|84
7OYD|1|K|G|85
*
7OYD|1|K|C|92
7OYD|1|K|G|93
7OYD|1|K|C|94

Current chains

Chain K

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain F

uL30

Chain I

60S ribosomal protein L10

Chain S

RPL18A