IL_7OYD_260
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7OYD|1|5|A|1654, 7OYD|1|5|G|1658
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_260 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0729
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|OMG|1526
7OYD|1|5|A|1527
7OYD|1|5|A2M|1528
7OYD|1|5|A|1529
7OYD|1|5|G|1530
*
7OYD|1|5|C|1652
7OYD|1|5|U|1653
7OYD|1|5|A|1654
7OYD|1|5|G|1655
7OYD|1|5|U|1656
7OYD|1|5|A|1657
7OYD|1|5|G|1658
7OYD|1|5|C|1659
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- L13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
Coloring options: