IL_7OYD_267
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_267 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.0959
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
7OYD|1|5|G|2362
7OYD|1|5|U|2363
7OYD|1|5|A|2364
7OYD|1|5|G|2365
7OYD|1|5|U|2366
7OYD|1|5|A2M|2367
7OYD|1|5|OMG|2368
*
7OYD|1|5|C|3862
7OYD|1|5|G|3863
7OYD|1|5|A|3864
7OYD|1|5|A|3865
7OYD|1|5|A|3866
7OYD|1|5|C|3867
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
Coloring options: