IL_7OYD_269
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- (PSU)CA(A2M)AGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_269 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.1971
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|5|PSU|3719
7OYD|1|5|C|3720
7OYD|1|5|A|3721
7OYD|1|5|A2M|3722
7OYD|1|5|A|3723
7OYD|1|5|G|3724
7OYD|1|5|U|3725
*
7OYD|1|5|A|3736
7OYD|1|5|A|3737
7OYD|1|5|U|3738
7OYD|1|5|G|3739
7OYD|1|5|A|3740
7OYD|1|5|A|3741
7OYD|1|5|G|3742
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
- Chain o
- RPL36A
- Chain x
- Ribosomal protein uL1
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