IL_7OYD_270
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 7OYD|1|5|A2M|3789, 7OYD|1|5|C|3795, 7OYD|1|5|C|3814
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_270 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.4026
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|5|C|3785
7OYD|1|5|5MC|3786
7OYD|1|5|A|3787
7OYD|1|5|A|3788
7OYD|1|5|A2M|3789
7OYD|1|5|U|3790
7OYD|1|5|G|3791
7OYD|1|5|C|3792
7OYD|1|5|C|3793
7OYD|1|5|U|3794
7OYD|1|5|C|3795
7OYD|1|5|OMG|3796
*
7OYD|1|5|C|3812
7OYD|1|5|G|3813
7OYD|1|5|C|3814
7OYD|1|5|G|3815
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
Coloring options: