IL_7OYD_272

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*(PSU)CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_272 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.4142

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7OYD|1|5|G|4404
7OYD|1|5|G|4405
*
7OYD|1|5|PSU|4446
7OYD|1|5|C|4447
7OYD|1|5|C|4448

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29

Chain s1

Dap1b