IL_7OYD_273
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GC(PSU)UG*UGA(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_273 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.557
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|5|G|4405
7OYD|1|5|C|4406
7OYD|1|5|PSU|4407
7OYD|1|5|U|4408
7OYD|1|5|G|4409
*
7OYD|1|5|U|4443
7OYD|1|5|G|4444
7OYD|1|5|A|4445
7OYD|1|5|PSU|4446
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
- Chain s1
- Dap1b
Coloring options: