IL_7OYD_282

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCAUU*ACCUCGGGC

Length

14 nucleotides

Bulged bases

7OYD|1|9|U|305, 7OYD|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_282 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3892

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OYD|1|9|G|215
7OYD|1|9|C|216
7OYD|1|9|A|217
7OYD|1|9|U|218
7OYD|1|9|U|219
*
7OYD|1|9|A|302
7OYD|1|9|C|303
7OYD|1|9|C|304
7OYD|1|9|U|305
7OYD|1|9|C|306
7OYD|1|9|G|307
7OYD|1|9|G|308
7OYD|1|9|G|309
7OYD|1|9|C|310

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8