IL_7OYD_288
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7OYD|1|9|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_288 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2444
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OYD|1|9|G|1281
7OYD|1|9|A|1282
7OYD|1|9|C|1283
7OYD|1|9|A|1284
7OYD|1|9|G|1285
7OYD|1|9|G|1286
7OYD|1|9|A|1287
7OYD|1|9|U|1288
7OYD|1|9|U|1289
7OYD|1|9|G|1290
*
7OYD|1|9|C|1309
7OYD|1|9|U|1310
7OYD|1|9|C|1311
7OYD|1|9|G|1312
7OYD|1|9|A|1313
7OYD|1|9|U|1314
7OYD|1|9|U|1315
7OYD|1|9|C|1316
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Dd
- uS14
- Chain KK
- eS10
Coloring options: