IL_7P48_034

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7P48|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1027

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7P48|1|A|U|1062
7P48|1|A|U|1063
7P48|1|A|A|1064
7P48|1|A|A|1065
7P48|1|A|G|1066
7P48|1|A|U|1067
7P48|1|A|G|1068
*
7P48|1|A|C|1184
7P48|1|A|U|1185
7P48|1|A|A|1186
7P48|1|A|A|1187
7P48|1|A|A|1188

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain H

50S ribosomal protein L13