IL_7P7Q_042

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7P7Q|1|A|A|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_042 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1327

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7P7Q|1|A|U|1057
7P7Q|1|A|U|1058
7P7Q|1|A|A|1059
7P7Q|1|A|A|1060
7P7Q|1|A|G|1061
7P7Q|1|A|U|1062
7P7Q|1|A|G|1063
*
7P7Q|1|A|C|1179
7P7Q|1|A|U|1180
7P7Q|1|A|A|1181
7P7Q|1|A|A|1182
7P7Q|1|A|A|1183

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13