IL_7P7Q_139
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7P7Q|1|a|A|558, 7P7Q|1|a|U|560, 7P7Q|1|a|A|561
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7P7Q_139 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1842
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7P7Q|1|a|G|541
7P7Q|1|a|U|542
7P7Q|1|a|G|543
7P7Q|1|a|C|544
7P7Q|1|a|C|545
7P7Q|1|a|A|546
7P7Q|1|a|G|547
*
7P7Q|1|a|C|554
7P7Q|1|a|G|555
7P7Q|1|a|G|556
7P7Q|1|a|U|557
7P7Q|1|a|A|558
7P7Q|1|a|A|559
7P7Q|1|a|U|560
7P7Q|1|a|A|561
7P7Q|1|a|C|562
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- mRNA
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
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