IL_7P7R_020

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7P7R|1|A|G|840, 7P7R|1|A|G|844

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_020 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0725

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7P7R|1|A|G|713
7P7R|1|A|A|714
7P7R|1|A|A|715
7P7R|1|A|A|716
7P7R|1|A|C|717
*
7P7R|1|A|G|838
7P7R|1|A|A|839
7P7R|1|A|G|840
7P7R|1|A|A|841
7P7R|1|A|U|842
7P7R|1|A|A|843
7P7R|1|A|G|844
7P7R|1|A|C|845

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15