IL_7P7R_047

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7P7R|1|A|A|1127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_047 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2905

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7P7R|1|A|G|1126
7P7R|1|A|A|1127
7P7R|1|A|G|1128
7P7R|1|A|U|1129
7P7R|1|A|G|1130
*
7P7R|1|A|C|1139
7P7R|1|A|U|1140
7P7R|1|A|C|1141

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36