IL_7P7R_050

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7P7R|1|A|U|1247

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_050 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1156

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7P7R|1|A|C|1244
7P7R|1|A|G|1245
7P7R|1|A|U|1246
7P7R|1|A|U|1247
7P7R|1|A|G|1248
7P7R|1|A|A|1249
7P7R|1|A|A|1250
7P7R|1|A|G|1251
*
7P7R|1|A|U|1270
7P7R|1|A|G|1271
7P7R|1|A|G|1272
7P7R|1|A|A|1273
7P7R|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20