IL_7P7R_087

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_087 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2496

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7P7R|1|A|G|2123
7P7R|1|A|U|2124
7P7R|1|A|A|2125
7P7R|1|A|C|2126
7P7R|1|A|A|2127
7P7R|1|A|G|2128
7P7R|1|A|G|2129
7P7R|1|A|A|2130
7P7R|1|A|U|2131
7P7R|1|A|A|2132
7P7R|1|A|G|2133
*
7P7R|1|A|C|2191
7P7R|1|A|C|2192

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ARE-ABC-F family resistance factor PoxtA

Chain F

50S ribosomal protein L1