IL_7P7R_088

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_088 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.1772

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7P7R|1|A|G|2137
7P7R|1|A|G|2138
7P7R|1|A|A|2139
7P7R|1|A|G|2140
*
7P7R|1|A|C|2174
7P7R|1|A|G|2175
7P7R|1|A|C|2176
7P7R|1|A|U|2177
7P7R|1|A|G|2178
7P7R|1|A|G|2179
7P7R|1|A|U|2180
7P7R|1|A|G|2181
7P7R|1|A|G|2182
7P7R|1|A|G|2183
7P7R|1|A|A|2184
7P7R|1|A|U|2185
7P7R|1|A|A|2186
7P7R|1|A|C|2187

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

ARE-ABC-F family resistance factor PoxtA

Chain F

50S ribosomal protein L1