IL_7P7R_105

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_105 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.08

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7P7R|1|A|U|2665
7P7R|1|A|U|2666
7P7R|1|A|A|2667
7P7R|1|A|G|2668
7P7R|1|A|U|2669
7P7R|1|A|A|2670
7P7R|1|A|C|2671
*
7P7R|1|A|G|2676
7P7R|1|A|G|2677
7P7R|1|A|A|2678
7P7R|1|A|C|2679
7P7R|1|A|C|2680
7P7R|1|A|G|2681

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L6