IL_7P7R_186

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7R_186 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0522

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7P7R|1|A|G|1708
7P7R|1|A|G|1709
7P7R|1|A|A|1710
7P7R|1|A|A|1711
7P7R|1|A|C|1712
7P7R|1|A|U|1713
7P7R|1|A|C|1714
7P7R|1|A|G|1715
7P7R|1|A|G|1716
*
7P7R|1|A|C|2003
7P7R|1|A|U|2004
7P7R|1|A|G|2005
7P7R|1|A|U|2006
7P7R|1|A|C|2007

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14