IL_7PHC_010

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GC*GAUC

Length

6 nucleotides

Bulged bases

7PHC|1|3|U|403

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_010 not in the Motif Atlas

Geometric match to IL_5J7L_342

Geometric discrepancy: 0.3502

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7PHC|1|3|G|302
7PHC|1|3|C|303
*
7PHC|1|3|G|401
7PHC|1|3|A|402
7PHC|1|3|U|403
7PHC|1|3|C|404

Current chains

Chain 3

23S ribosomal RNA

Nearby chains