IL_7PHC_037

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UCCCCAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_037 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2771

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

7PHC|1|3|U|1040
7PHC|1|3|C|1041
7PHC|1|3|C|1042
7PHC|1|3|C|1043
7PHC|1|3|C|1044
7PHC|1|3|A|1045
7PHC|1|3|A|1046
7PHC|1|3|A|1047
*
7PHC|1|3|U|1185
7PHC|1|3|A|1186

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20