IL_7PHC_044

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

AGUUGAAG*UGGAU

Length

13 nucleotides

Bulged bases

7PHC|1|3|U|1241

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_044 not in the Motif Atlas

Geometric match to IL_5Y7M_008

Geometric discrepancy: 0.2835

The information below is about IL_5Y7M_008

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7PHC|1|3|A|1238
7PHC|1|3|G|1239
7PHC|1|3|U|1240
7PHC|1|3|U|1241
7PHC|1|3|G|1242
7PHC|1|3|A|1243
7PHC|1|3|A|1244
7PHC|1|3|G|1245
*
7PHC|1|3|U|1264
7PHC|1|3|G|1265
7PHC|1|3|G|1266
7PHC|1|3|A|1267
7PHC|1|3|U|1268

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22