IL_7PHC_062

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGCCAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7PHC|1|3|C|1808, 7PHC|1|3|U|1823, 7PHC|1|3|U|1827

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_062 not in the Motif Atlas

Geometric match to IL_7A0S_065

Geometric discrepancy: 0.1764

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PHC|1|3|U|1805
7PHC|1|3|G|1806
7PHC|1|3|C|1807
7PHC|1|3|C|1808
7PHC|1|3|A|1809
7PHC|1|3|A|1810
7PHC|1|3|A|1811
*
7PHC|1|3|U|1820
7PHC|1|3|G|1821
7PHC|1|3|A|1822
7PHC|1|3|U|1823
7PHC|1|3|G|1824
7PHC|1|3|U|1825
7PHC|1|3|A|1826
7PHC|1|3|U|1827
7PHC|1|3|A|1828

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2