IL_7PHC_092

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_092 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.2745

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7PHC|1|3|C|2474
7PHC|1|3|C|2475
7PHC|1|3|A|2476
7PHC|1|3|A|2477
7PHC|1|3|G|2478
*
7PHC|1|3|C|2488
7PHC|1|3|G|2489
7PHC|1|3|A|2490
7PHC|1|3|C|2491
7PHC|1|3|G|2492

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain 6

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16