IL_7PHC_099

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_099 not in the Motif Atlas

Geometric match to IL_1UN6_004

Geometric discrepancy: 0.3312

The information below is about IL_1UN6_004

Detailed Annotation

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_24254.1

Basepair signature

cWW-cWW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7PHC|1|3|C|2660
7PHC|1|3|U|2661
7PHC|1|3|A|2662
7PHC|1|3|G|2663
7PHC|1|3|U|2664
7PHC|1|3|A|2665
7PHC|1|3|C|2666
*
7PHC|1|3|G|2671
7PHC|1|3|G|2672
7PHC|1|3|A|2673
7PHC|1|3|C|2674
7PHC|1|3|C|2675
7PHC|1|3|G|2676

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L6