IL_7PHC_196

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7PHC|1|3|A|1515

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_196 not in the Motif Atlas

Homologous match to IL_9DFE_061

Geometric discrepancy: 0.5593

The information below is about IL_9DFE_061

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

7PHC|1|3|U|1514
7PHC|1|3|A|1515
7PHC|1|3|G|1516
*
7PHC|1|3|C|1524
7PHC|1|3|G|1525

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9