IL_7PHC_228

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7PHC|1|3|G|1278

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_228 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.2045

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

7PHC|1|3|C|1227
7PHC|1|3|G|1228
7PHC|1|3|U|1229
*
7PHC|1|3|A|1277
7PHC|1|3|G|1278
7PHC|1|3|U|1279
7PHC|1|3|G|1280

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20