IL_7PIA_055

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CGAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_055 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.3237

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7PIA|1|3|C|1552
7PIA|1|3|G|1553
7PIA|1|3|A|1554
7PIA|1|3|G|1555
*
7PIA|1|3|C|1575
7PIA|1|3|G|1576
7PIA|1|3|A|1577
7PIA|1|3|A|1578
7PIA|1|3|G|1579

Current chains

Chain 3

23S ribosomal RNA

Nearby chains