IL_7PIA_064

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UGCCAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7PIA|1|3|C|1808, 7PIA|1|3|U|1823, 7PIA|1|3|U|1827

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_064 not in the Motif Atlas

Geometric match to IL_7A0S_065

Geometric discrepancy: 0.3359

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PIA|1|3|U|1805
7PIA|1|3|G|1806
7PIA|1|3|C|1807
7PIA|1|3|C|1808
7PIA|1|3|A|1809
7PIA|1|3|A|1810
7PIA|1|3|A|1811
*
7PIA|1|3|U|1820
7PIA|1|3|G|1821
7PIA|1|3|A|1822
7PIA|1|3|U|1823
7PIA|1|3|G|1824
7PIA|1|3|U|1825
7PIA|1|3|A|1826
7PIA|1|3|U|1827
7PIA|1|3|A|1828

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2