IL_7PIA_070
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- CGAAAUUCCUAG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 7PIA|1|3|A|1945, 7PIA|1|3|U|1946, 7PIA|1|3|A|1951
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIA_070 not in the Motif Atlas
- Homologous match to IL_9DFE_077
- Geometric discrepancy: 0.5236
- The information below is about IL_9DFE_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
7PIA|1|3|C|1941
7PIA|1|3|G|1942
7PIA|1|3|A|1943
7PIA|1|3|A|1944
7PIA|1|3|A|1945
7PIA|1|3|U|1946
7PIA|1|3|U|1947
7PIA|1|3|C|1948
7PIA|1|3|C|1949
7PIA|1|3|U|1950
7PIA|1|3|A|1951
7PIA|1|3|G|1952
*
7PIA|1|3|C|1968
7PIA|1|3|C|1969
7PIA|1|3|C|1970
7PIA|1|3|G|1971
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Small subunit ribosomal RNA; SSU rRNA
- Chain 7
- Transfer RNA; tRNA
Coloring options: