IL_7PIA_108

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

7PIA|1|3|A|2883

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_108 not in the Motif Atlas

Homologous match to IL_8VTW_107

Geometric discrepancy: 0.3253

The information below is about IL_8VTW_107

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7PIA|1|3|G|2842
7PIA|1|3|G|2843
*
7PIA|1|3|U|2882
7PIA|1|3|A|2883
7PIA|1|3|C|2884

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19