IL_7PIA_144

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_144 not in the Motif Atlas

Geometric match to IL_4W90_004

Geometric discrepancy: 0.3794

The information below is about IL_4W90_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7PIA|1|5|G|651
7PIA|1|5|A|652
*
7PIA|1|5|U|748
7PIA|1|5|G|749
7PIA|1|5|A|750
7PIA|1|5|C|751

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S6

Chain G

30S ribosomal protein S8

Chain N

30S ribosomal protein S15