IL_7PIA_155

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_155 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3617

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7PIA|1|5|U|948
7PIA|1|5|G|949
*
7PIA|1|5|C|1201
7PIA|1|5|A|1202
7PIA|1|5|A|1203

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain 8

Transfer RNA; tRNA

Chain L

30S ribosomal protein S13

Chain R

30S ribosomal protein S19