IL_7PIA_196

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7PIA|1|3|G|2246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_196 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.3004

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7PIA|1|3|U|2088
7PIA|1|3|A|2089
7PIA|1|3|G|2090
*
7PIA|1|3|U|2244
7PIA|1|3|G|2245
7PIA|1|3|G|2246
7PIA|1|3|G|2247

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L28