IL_7PIA_197

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAUC*GUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_197 not in the Motif Atlas

Homologous match to IL_4WF9_124

Geometric discrepancy: 0.577

The information below is about IL_4WF9_124

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7PIA|1|3|G|2100
7PIA|1|3|A|2101
7PIA|1|3|U|2102
7PIA|1|3|C|2103
*
7PIA|1|3|G|2201
7PIA|1|3|U|2202
7PIA|1|3|U|2203
7PIA|1|3|C|2204

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28