Motif IL_10994.2 Version IL_10994.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_458 | 8CRE | 0.3004 | 1 | Non-canonical cWW with near cWH | CM | SSU rRNA | C | 1324 | A | 1326 | C | 1327 | U | 1328 | * | A | 1368 | G | 1369 | A | 1370 | G | 1371 | cWW | ncwW | ncWH | cWW |
| 2 | IL_4ERD_002 | 4ERD | 0.1799 | 0 | Tandem non-canonical cWW pairs | C+D | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 3 | IL_6L0Y_002 | 6L0Y | 0.0000 | 0 | Tandem non-canonical cWW pairs | A | RNA (22-mer) | U | 10 | U | 11 | C | 12 | G | 13 | * | U | 10||||5_555 | U | 11||||5_555 | C | 12||||5_555 | G | 13||||5_555 | cWW | cWW | cWW | cWW |
| 4 | IL_4WF9_124 | 4WF9 | 0.3290 | 0 | Tandem non-canonical cWW pairs | X | LSU rRNA | G | 2217 | G | 2218 | C | 2219 | U | 2220 | * | A | 2123 | U | 2124 | U | 2125 | C | 2126 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 2 |
| CUACU*AGAG | 1 |
| GGCU*AUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 2 |
| UAC*GA | 1 |
| GC*UU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (3)
- Non-canonical cWW with near cWH (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.23 | Max 0.36
Coloring options: