IL_7PIA_200

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAG*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_200 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.4996

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7PIA|1|3|C|2305
7PIA|1|3|A|2306
7PIA|1|3|G|2307
*
7PIA|1|3|U|2325
7PIA|1|3|G|2326
7PIA|1|3|U|2327
7PIA|1|3|A|2328
7PIA|1|3|G|2329

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain d

50S ribosomal protein L5

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L27