IL_7PIA_217

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

7PIA|1|3|U|902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_217 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.4086

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7PIA|1|3|G|900
7PIA|1|3|C|901
7PIA|1|3|U|902
7PIA|1|3|A|903
7PIA|1|3|C|904
7PIA|1|3|U|905
*
7PIA|1|3|A|946
7PIA|1|3|A|947
7PIA|1|3|A|948
7PIA|1|3|C|949

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27