IL_7PIA_228

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_228 not in the Motif Atlas

Homologous match to IL_9DFE_103

Geometric discrepancy: 0.4107

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7PIA|1|3|C|2688
7PIA|1|3|C|2689
7PIA|1|3|U|2690
7PIA|1|3|C|2691
7PIA|1|3|U|2692
*
7PIA|1|3|A|2733
7PIA|1|3|C|2734
7PIA|1|3|G|2735

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19