IL_7PIA_230
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- CAUG*CAAUG
- Length
- 9 nucleotides
- Bulged bases
- 7PIA|1|5|A|393
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIA_230 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.3947
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7PIA|1|5|C|44
7PIA|1|5|A|45
7PIA|1|5|U|46
7PIA|1|5|G|47
*
7PIA|1|5|C|391
7PIA|1|5|A|392
7PIA|1|5|A|393
7PIA|1|5|U|394
7PIA|1|5|G|395
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S4
- Chain O
- 30S ribosomal protein S16
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