IL_7PIB_065

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAA*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_065 not in the Motif Atlas

Geometric match to IL_7RQB_074

Geometric discrepancy: 0.2204

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7PIB|1|3|U|1858
7PIB|1|3|U|1859
7PIB|1|3|A|1860
7PIB|1|3|A|1861
7PIB|1|3|A|1862
*
7PIB|1|3|U|1894
7PIB|1|3|G|1895
7PIB|1|3|A|1896
7PIB|1|3|A|1897
7PIB|1|3|G|1898

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain v

50S ribosomal protein L28