IL_7PIB_068

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAAUUCCUAG*CCCG

Length

16 nucleotides

Bulged bases

7PIB|1|3|A|1945, 7PIB|1|3|A|1951, 7PIB|1|3|C|1970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_068 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.2347

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

7PIB|1|3|C|1941
7PIB|1|3|G|1942
7PIB|1|3|A|1943
7PIB|1|3|A|1944
7PIB|1|3|A|1945
7PIB|1|3|U|1946
7PIB|1|3|U|1947
7PIB|1|3|C|1948
7PIB|1|3|C|1949
7PIB|1|3|U|1950
7PIB|1|3|A|1951
7PIB|1|3|G|1952
*
7PIB|1|3|C|1968
7PIB|1|3|C|1969
7PIB|1|3|C|1970
7PIB|1|3|G|1971

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA