IL_7PIB_069

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_069 not in the Motif Atlas

Geometric match to IL_4E48_003

Geometric discrepancy: 0.0935

The information below is about IL_4E48_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7PIB|1|3|G|1952
7PIB|1|3|U|1953
7PIB|1|3|C|1954
*
7PIB|1|3|G|1966
7PIB|1|3|U|1967
7PIB|1|3|C|1968

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA