IL_7PIB_079

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAGAGAAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_079 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5512

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7PIB|1|3|G|2117
7PIB|1|3|U|2118
7PIB|1|3|A|2119
7PIB|1|3|G|2120
7PIB|1|3|A|2121
7PIB|1|3|G|2122
7PIB|1|3|A|2123
7PIB|1|3|A|2124
7PIB|1|3|U|2125
7PIB|1|3|A|2126
7PIB|1|3|G|2127
*
7PIB|1|3|C|2186
7PIB|1|3|C|2187

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA