IL_7PIB_087

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_087 not in the Motif Atlas

Geometric match to IL_1S03_004

Geometric discrepancy: 0.2255

The information below is about IL_1S03_004

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7PIB|1|3|G|2462
7PIB|1|3|G|2463
*
7PIB|1|3|C|2504
7PIB|1|3|A|2505
7PIB|1|3|C|2506

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain b

50S ribosomal protein L3

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27