IL_7PIB_115

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAUC*GAG

Length

8 nucleotides

Bulged bases

7PIB|1|5|A|115, 7PIB|1|5|A|116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_115 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.4096

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7PIB|1|5|C|114
7PIB|1|5|A|115
7PIB|1|5|A|116
7PIB|1|5|U|117
7PIB|1|5|C|118
*
7PIB|1|5|G|226
7PIB|1|5|A|227
7PIB|1|5|G|228

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain P

30S ribosomal protein S17

Chain S

30S ribosomal protein S20