IL_7PIB_122

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AU*AGAAU

Length

7 nucleotides

Bulged bases

7PIB|1|5|A|302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIB_122 not in the Motif Atlas

Homologous match to IL_5J7L_016

Geometric discrepancy: 0.2829

The information below is about IL_5J7L_016

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7PIB|1|5|A|288
7PIB|1|5|U|289
*
7PIB|1|5|A|300
7PIB|1|5|G|301
7PIB|1|5|A|302
7PIB|1|5|A|303
7PIB|1|5|U|304

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S12

Chain O

30S ribosomal protein S16