IL_7PIB_168
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAAU*AGCA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIB_168 not in the Motif Atlas
- Geometric match to IL_5J7L_283
- Geometric discrepancy: 0.2142
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7PIB|1|5|U|1399
7PIB|1|5|A|1400
7PIB|1|5|A|1401
7PIB|1|5|U|1402
*
7PIB|1|5|A|1448
7PIB|1|5|G|1449
7PIB|1|5|C|1450
7PIB|1|5|A|1451
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S12
- Chain j
- 50S ribosomal protein L14
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